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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142048689_142050670_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142048689 - 142050670
Intron Length:
1982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATAAATTAATT
Flanking Amino Acid:
PELITTMLVPASWWVLNNN*
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
80.3
32.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
39.8
-1.1
2.9
51.1
40
Minor BPS
52.5
0.16
1.8
71.26
38.9

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040662
142048588 - 142108389
59802
ENSAPLT00000026452
142048588 - 142108389
59802
ENSAPLT00000013049
142048588 - 142107959
59372