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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142051870_142053946_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142051870 - 142053946
Intron Length:
2077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTCCATTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAA
U12 Branch Point Sequence:
TTACACTTGACT
Flanking Amino Acid:
ESASAQGGCLHVSIQKLPND
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
60.2
0.25
1.2
63.6
35.5
Major PPT
72.1
0.5
0.8
64.6
36.1
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
67.9
0.65
1.5
83.14
37.2

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040662
142048588 - 142108389
59802
ENSAPLT00000033646
142048588 - 142108389
59802
ENSAPLT00000026452
142048588 - 142108389
59802
ENSAPLT00000013049
142048588 - 142107959
59372