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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142059061_142060920_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142059061 - 142060920
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCAAA
5'SS Class:
major
3'SS Sequence:
TGTTTCTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
ACCTTATGAACT
Flanking Amino Acid:
ETTEEQTRQERQGPTKPEVL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.3
74.1
38.3
Major BPS
75.5
0.63
1
66
40.9
Major PPT
77.4
0.62
0.9
73.7
36.9
Minor 5ss
34.1
-1.8
2.7
40
45.6
Minor BPS
51.5
0.13
1.7
67.9
42.8

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040662
142048588 - 142108389
59802
ENSAPLT00000033646
142048588 - 142108389
59802
ENSAPLT00000026452
142048588 - 142108389
59802
ENSAPLT00000013049
142048588 - 142107959
59372