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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14207182_14291725_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14207182 - 14291725
Intron Length:
84544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TCATTTCTATCT
Flanking Amino Acid:
PRNSKSSPVDSNRSTPNNHD
Intron Amino Acid Position:
1135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
41.3
Major BPS
76.2
0.65
1
67
39.8
Major PPT
85.5
0.8
0.6
84.8
22.9
Minor 5ss
39.3
-1.2
3.1
52.3
44.6
Minor BPS
48.7
-0
1.9
68.58
42.6

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021470
13864772 - 14307028
442257
ENSAPLT00000019870
13864772 - 14307028
442257
ENSAPLT00000047719
13864772 - 14307028
442257
ENSAPLT00000003606
13864772 - 14305998
441227
ENSAPLT00000041564
13864772 - 14307028
442257
ENSAPLT00000003604
13864772 - 14305998
441227
ENSAPLT00000038237
13864772 - 14307028
442257