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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142076594_142079439_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142076594 - 142079439
Intron Length:
2846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGGTCATGAGTA
Flanking Amino Acid:
TDNLDTEELCEYFSQHLGEY
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
44.7
-0.4
1.8
53.04
38.8

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026452
142048588 - 142108389
59802
ENSAPLT00000013049
142048588 - 142107959
59372
ENSAPLT00000040662
142048588 - 142108389
59802
ENSAPLT00000033646
142048588 - 142108389
59802