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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142079466_142094122_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142079466 - 142094122
Intron Length:
14657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTATCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTCATTAACC
Flanking Amino Acid:
LFHTIDTHNTDNLDTEELCE
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.4
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.9
0.88
0.7
81.2
36.4
Minor 5ss
38.5
-1.3
3.3
49.1
41.3
Minor BPS
70.8
0.63
1.6
76.59
39.2

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033646
142048588 - 142108389
59802
ENSAPLT00000013049
142048588 - 142107959
59372
ENSAPLT00000040662
142048588 - 142108389
59802