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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142079466_142104095_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142079466 - 142104095
Intron Length:
24630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTCATTAACC
Flanking Amino Acid:
PRYTEKSRQECNLDTEELCE
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.9
0.88
0.7
81.2
36.4
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
70.8
0.63
1.6
76.59
39.2

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026452
142048588 - 142108389
59802