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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142094232_142104095_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142094232 - 142104095
Intron Length:
9864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAATT
Flanking Amino Acid:
RDILRRADKNDDGKLSFDEF
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
73.1
0.8
1.3
88.05
30.7

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013049
142048588 - 142107959
59372