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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142094232_142107710_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142094232 - 142107710
Intron Length:
13479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAATT
Flanking Amino Acid:
AGRGAAHLPRYDGKLSFDEF
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.5
37
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
33
-1.9
2.7
39.5
38.8
Minor BPS
73.1
0.8
1.3
88.05
30.7

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040662
142048588 - 142108389
59802
ENSAPLT00000033646
142048588 - 142108389
59802