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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142104121_142107710_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142104121 - 142107710
Intron Length:
3590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TCTTTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCTTTTTATTT
Flanking Amino Acid:
LGAGLRIFRDILRRADKNDD
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.5
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.8
0.78
0.8
85.3
28.2
Minor 5ss
33
-1.9
2.7
39.5
38.8
Minor BPS
56.7
0.29
1.6
70.13
42.3

Associated Gene:

Gene:
NECAB1
Ensembl Gene ID:
ENSAPLG00000012515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026452
142048588 - 142108389
59802
ENSAPLT00000013049
142048588 - 142107959
59372