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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142149795_142153210_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142149795 - 142153210
Intron Length:
3416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
VSGYFIFSLQIVISIGLMFY
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.9
0.83
0.8
81.4
35.2
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
TMEM64
Ensembl Gene ID:
ENSAPLG00000012726
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013249
142143372 - 142153452
10081