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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142340125_142340971_R

Intron Information:

Intron Rank:
129912
Intron Class:
major
Intron Phase:
Intron Coordinates:
142340125 - 142340971
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTAACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.9
0.74
0.9
78.8
38.7
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017078
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045583
142336754 - 142341953
5200