Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142351966_142352053_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

142351966 - 142352053

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGTGT

5'SS Class:

major

3'SS Sequence:

GTTCTGATTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

ACATCATCAAAT

Flanking Amino Acid:

QLKSSEDFMQTWRKYDSDHS

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

63.9

42.9

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

76.9

0.61

40.2

Minor 5ss

36.7

-1.5

3.6

48.2

Minor BPS

48.9

-0

1.9

66.65

43.1

Associated Gene:

Gene:

CALB1

Ensembl Gene ID:

ENSAPLG00000005891

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006123

142341974 - 142358744

16771