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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142352111_142354834_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142352111 - 142354834
Intron Length:
2724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTAACA
Flanking Amino Acid:
SGFIDSEELKSFLKDLLQKA
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.3
0.77
0.9
81.1
35.2
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
77.6
0.86
1.1
83.48
30.3

Associated Gene:

Gene:
CALB1
Ensembl Gene ID:
ENSAPLG00000005891
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006123
142341974 - 142358744
16771