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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142354913_142357346_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142354913 - 142357346
Intron Length:
2434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTAATTGTGATT
Flanking Amino Acid:
SKLTEYTEIMLRMFDANNDG
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
79.6
29.4
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
84.2
0.77
0.8
81.3
36.2
Minor 5ss
41.7
-0.9
3.1
53.2
45
Minor BPS
46.7
-0.1
2
67.09
38.4

Associated Gene:

Gene:
CALB1
Ensembl Gene ID:
ENSAPLG00000005891
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006123
142341974 - 142358744
16771