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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142357403_142357486_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
142357403 - 142357486
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTATATCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTCTTTATAT
Flanking Amino Acid:
DGKLELTELARLLPVQENFL
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
67.8
0.4
1.1
68.1
36.8
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
65
0.55
1.7
82.03
39.2

Associated Gene:

Gene:
CALB1
Ensembl Gene ID:
ENSAPLG00000005891
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006123
142341974 - 142358744
16771