Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142357669_142357799_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

142357669 - 142357799

Intron Length:

131

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TATTATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTCTCTTTAATA

Flanking Amino Acid:

FNKAFEMYDQDGNGYIDENE

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

78.2

36.3

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

87.5

0.84

0.8

85.1

34.8

Minor 5ss

38.6

-1.3

52.1

38.3

Minor BPS

81.1

0.97

82.68

32.7

Associated Gene:

Gene:

CALB1

Ensembl Gene ID:

ENSAPLG00000005891

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006123

142341974 - 142358744

16771