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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142365810_142368206_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142365810 - 142368206
Intron Length:
2397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAGC
5'SS Class:
major
3'SS Sequence:
TCTTAAATCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTCTTAAAT
Flanking Amino Acid:
VIQPGPIKTKGAFSRLDPTG
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.7
41.2
Major BPS
100
1.24
0.5
100
0
Major PPT
74.2
0.55
0.9
70.8
38.5
Minor 5ss
34.4
-1.8
3
45.9
42.2
Minor BPS
77.3
0.93
1.3
90.72
32

Associated Gene:

Gene:
DECR1
Ensembl Gene ID:
ENSAPLG00000006309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006568
142364976 - 142376108
11133