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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142368280_142370243_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142368280 - 142370243
Intron Length:
1964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
AATGAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTAATGAATT
Flanking Amino Acid:
SAKAGVEAMSKSLAAEWGKY
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
65.1
0.34
1
60
45
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
53.1
0.17
1.9
76.49
39.4

Associated Gene:

Gene:
DECR1
Ensembl Gene ID:
ENSAPLG00000006309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006568
142364976 - 142376108
11133