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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142370344_142371201_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142370344 - 142371201
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTAAT
5'SS Class:
major
3'SS Sequence:
TTGCAACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATGT
Flanking Amino Acid:
IGKELIKAQKGAAFLAITTI
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
78.1
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69
0.43
0.9
59.5
41.6
Minor 5ss
41.9
-0.9
3
59.8
44.7
Minor BPS
61.2
0.43
1.9
82.72
39.3

Associated Gene:

Gene:
DECR1
Ensembl Gene ID:
ENSAPLG00000006309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006568
142364976 - 142376108
11133