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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142372799_142372888_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142372799 - 142372888
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
CATTATTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCATTATT
Flanking Amino Acid:
EEISSKSGNKVYAIQCDVRD
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71
0.47
1
65.1
39.8
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
66.5
0.6
1.9
89.31
34.9

Associated Gene:

Gene:
DECR1
Ensembl Gene ID:
ENSAPLG00000006309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006568
142364976 - 142376108
11133