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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142372947_142373841_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142372947 - 142373841
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TACTTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGCATTTAATT
Flanking Amino Acid:
SLGAKCVIASRKLDVLKGTA
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
84.5
33
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78
0.63
0.8
70.3
40
Minor 5ss
41.5
-0.9
3
60.7
43.8
Minor BPS
64.4
0.53
1.5
78.19
38.4

Associated Gene:

Gene:
DECR1
Ensembl Gene ID:
ENSAPLG00000006309
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006568
142364976 - 142376108
11133