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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142382848_142384373_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142382848 - 142384373
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTTCCATATGT
Flanking Amino Acid:
VMASVKVTVKTICALICGRP
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
89.7
0.89
0.6
87.8
22.3
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
57.5
0.31
2.2
84.93
41.5

Associated Gene:

Gene:
NBN
Ensembl Gene ID:
ENSAPLG00000006440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006686
142379109 - 142401612
22504