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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142384478_142387795_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142384478 - 142387795
Intron Length:
3318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTAACTTTAATC
Flanking Amino Acid:
QSRQQLPTPESFYPPVDEPS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86
0.81
0.8
80.6
31.4
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
67.1
0.51
1.3
68.81
36.5

Associated Gene:

Gene:
NBN
Ensembl Gene ID:
ENSAPLG00000006440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006686
142379109 - 142401612
22504