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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142391469_142391915_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142391469 - 142391915
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
CTCTCGGCTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
GTTCACCTAATA
Flanking Amino Acid:
VADTEIEEQPRMEIEKTSKT
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
69.3
37.7
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
67.5
0.39
0.9
60.7
35.4
Minor 5ss
38.2
-1.3
3.5
55.6
48.7
Minor BPS
52.3
0.07
1.9
67.96
37.7

Associated Gene:

Gene:
NBN
Ensembl Gene ID:
ENSAPLG00000006440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006686
142379109 - 142401612
22504