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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142392180_142392465_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142392180 - 142392465
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTACGGTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACTT
Flanking Amino Acid:
ITNYFQVARKRERDEEGGET
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
75.2
37.7
Major BPS
100
1.24
0.5
100
0
Major PPT
60.8
0.24
1.2
64
41.6
Minor 5ss
38.5
-1.3
3
50
46.2
Minor BPS
67.9
0.64
1.9
89.07
35.8

Associated Gene:

Gene:
NBN
Ensembl Gene ID:
ENSAPLG00000006440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006686
142379109 - 142401612
22504