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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142392896_142394825_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142392896 - 142394825
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTGAAT
Flanking Amino Acid:
AKQKENNETLRDDELGSVLT
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
100
1.24
0.5
100
0
Major PPT
72.3
0.5
1
66.8
38.1
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
69.9
0.71
1.7
90.05
33.3

Associated Gene:

Gene:
NBN
Ensembl Gene ID:
ENSAPLG00000006440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006686
142379109 - 142401612
22504