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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142394901_142395807_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142394901 - 142395807
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
GTTACTTGAAGT
Flanking Amino Acid:
EIKQESPPVLKDHNKIEDDS
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
55
0.23
1.8
74.45
42.1

Associated Gene:

Gene:
NBN
Ensembl Gene ID:
ENSAPLG00000006440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006686
142379109 - 142401612
22504