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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142397093_142398363_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142397093 - 142398363
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AAATACTGAAAA
Flanking Amino Acid:
LEDWLREELEEQNRRAREES
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
80
0.67
1
80.4
37
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
49.5
-0
1.7
60.15
38.2

Associated Gene:

Gene:
NBN
Ensembl Gene ID:
ENSAPLG00000006440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006686
142379109 - 142401612
22504