About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142418144_142420917_R

Intron Information:

Intron Rank:
138552
Intron Class:
major
Intron Phase:
Intron Coordinates:
142418144 - 142420917
Intron Length:
2774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCCTTGTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
66.6
0.37
1
66.8
38.4
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
57.8
0.32
2.1
74.4
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022023
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034919
142417883 - 142421667
3785