About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142458984_142459699_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142458984 - 142459699
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTGTCTCAGCT
Flanking Amino Acid:
KRPRCLQWLSVKTTKCVQLL
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
31.6
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
84.7
0.78
0.8
79.3
32.7
Minor 5ss
32.2
-2
3.5
44.1
44.7
Minor BPS
56.2
0.27
1.9
79.74
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007025
142458892 - 142477985
19094