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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142461625_142462970_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142461625 - 142462970
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTATCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATCT
Flanking Amino Acid:
FTPVPALLFNGLMTLLYLLV
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.6
0.64
0.8
71.3
39.6
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
66.5
0.6
1.8
88.81
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007025
142458892 - 142477985
19094