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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142463515_142464278_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142463515 - 142464278
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTCCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TCTTTTTCCATT
Flanking Amino Acid:
ALLTSDAVAVTFGSETLSYA
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
72.9
34.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87.3
0.84
0.7
82.1
28.1
Minor 5ss
41
-1
2.8
49.7
41.3
Minor BPS
48.8
-0
1.9
70.72
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007025
142458892 - 142477985
19094