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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142464403_142465325_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142464403 - 142465325
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGTGGAATAATT
Flanking Amino Acid:
YVTEEMKNPERNLPLSIAIS
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
44
-0.3
2.2
66.74
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007025
142458892 - 142477985
19094