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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142468070_142470546_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142468070 - 142470546
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CATTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATTTCTCTACAG
Flanking Amino Acid:
AVRLIAAACICSLTFINCVN
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
73.9
0.59
1
81
30.2
Major PPT
83
0.74
0.8
76.7
31.7
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
47.3
-0.3
2
59.66
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007025
142458892 - 142477985
19094