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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142487543_142492204_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142487543 - 142492204
Intron Length:
4662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGCT
5'SS Class:
major
3'SS Sequence:
CTTCTTTCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTAGTATTACAG
Flanking Amino Acid:
SIPKYNILSSDGDSGSLHSL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
72.1
37.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
73.7
0.53
1
78.9
27.2
Minor 5ss
33.3
-1.9
3.6
49.9
46.5
Minor BPS
40.7
-0.8
1.9
42.96
41.9

Associated Gene:

Gene:
RIPK2
Ensembl Gene ID:
ENSAPLG00000006833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007127
142485340 - 142507174
21835