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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142492311_142492961_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142492311 - 142492961
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GGAATTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTGTATAACT
Flanking Amino Acid:
SLNIPLNPQEETGSASIHCD
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
100
1.24
0.5
100
0
Major PPT
66.8
0.38
1.1
61.8
48.2
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
52.1
0.14
2.1
73.7
43.2

Associated Gene:

Gene:
RIPK2
Ensembl Gene ID:
ENSAPLG00000006833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007127
142485340 - 142507174
21835