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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142493052_142493208_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142493052 - 142493208
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ACATCTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AGAAACTTAATA
Flanking Amino Acid:
EAVILLKRSKSRYESQCIHK
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
77.4
0.62
0.9
73.8
36
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
56.5
0.2
1.5
61.85
37.5

Associated Gene:

Gene:
RIPK2
Ensembl Gene ID:
ENSAPLG00000006833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007127
142485340 - 142507174
21835