Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142496553_142496870_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

142496553 - 142496870

Intron Length:

318

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TCTATTTTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TCTATTTTGACA

Flanking Amino Acid:

EVMSRKQPFEEVINPLQIMY

Intron Amino Acid Position:

237

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

72.3

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

78.7

0.65

75.6

38.1

Minor 5ss

-2.2

3.2

39.6

45.9

Minor BPS

64.1

0.44

1.3

36.5

Associated Gene:

Gene:

RIPK2

Ensembl Gene ID:

ENSAPLG00000006833

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007127

142485340 - 142507174

21835