About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142502751_142503899_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142502751 - 142503899
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTGGTTTTATTT
Flanking Amino Acid:
NGSLNELLHGKDMYPDVPWC
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.7
0.74
1
80.7
36.7
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
48.8
-0
1.6
63.15
42.3

Associated Gene:

Gene:
RIPK2
Ensembl Gene ID:
ENSAPLG00000006833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007127
142485340 - 142507174
21835