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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142504054_142506983_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142504054 - 142506983
Intron Length:
2930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
CTTTTTATTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
LKCLQGPLLDSDRNHLLKEA
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79
0.65
1
83.8
30
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
RIPK2
Ensembl Gene ID:
ENSAPLG00000006833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007127
142485340 - 142507174
21835