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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142569653_142576704_F

Intron Information:

Intron Rank:
136447
Intron Class:
major
Intron Phase:
Intron Coordinates:
142569653 - 142576704
Intron Length:
7052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.1
0.86
0.8
80.9
36.4
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023516
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039984
142569509 - 142579191
9683
ENSAPLT00000017440
142569509 - 142579191
9683