About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142576810_142578033_F

Intron Information:

Intron Rank:
136450
Intron Class:
major
Intron Phase:
Intron Coordinates:
142576810 - 142578033
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTAAG
5'SS Class:
major
3'SS Sequence:
CATTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCCATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.7
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.1
0.68
0.8
78.3
34.4
Minor 5ss
37.5
-1.4
2.4
42.3
44.5
Minor BPS
49.4
0.04
1.6
63.02
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023516
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039984
142569509 - 142579191
9683