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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142699610_142704488_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142699610 - 142704488
Intron Length:
4879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATTTCTTTAATT
Flanking Amino Acid:
KQLTFGWHRAEILGALMSMV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
74.1
0.54
0.9
66.2
39.5
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
86.2
1.21
0.8
94.15
26.1

Associated Gene:

Gene:
SLC30A8
Ensembl Gene ID:
ENSAPLG00000014913
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045392
142685210 - 142714392
29183
ENSAPLT00000020342
142662212 - 142714392
52181
ENSAPLT00000015548
142683482 - 142714392
30911