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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142704643_142705140_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142704643 - 142705140
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
ACATCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AGTTTTACATCT
Flanking Amino Acid:
TSACAMLANILLSLILHQTG
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
71.7
34.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.4
0.62
0.9
73.8
36
Minor 5ss
43.4
-0.7
2.8
62.5
42.2
Minor BPS
44.2
-0.3
1.9
63.97
40.3

Associated Gene:

Gene:
SLC30A8
Ensembl Gene ID:
ENSAPLG00000014913
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045392
142685210 - 142714392
29183
ENSAPLT00000020342
142662212 - 142714392
52181
ENSAPLT00000015548
142683482 - 142714392
30911