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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142705331_142705728_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142705331 - 142705728
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATGAAATTAACA
Flanking Amino Acid:
LISALIIFFKPEYKIADPIC
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
80
0.75
1
78.6
31
Major PPT
82.8
0.74
0.8
81.3
36.3
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
52.2
0.07
1.8
65.29
40.3

Associated Gene:

Gene:
SLC30A8
Ensembl Gene ID:
ENSAPLG00000014913
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045392
142685210 - 142714392
29183
ENSAPLT00000020342
142662212 - 142714392
52181
ENSAPLT00000015548
142683482 - 142714392
30911