About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142709157_142713712_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
142709157 - 142713712
Intron Length:
4556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATGATC
5'SS Class:
major
3'SS Sequence:
TCCTGCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
72.5
36.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.8
0.54
1
68.3
37.4
Minor 5ss
38.6
-1.3
3.3
52.4
38.7
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
SLC30A8
Ensembl Gene ID:
ENSAPLG00000014913
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045392
142685210 - 142714392
29183
ENSAPLT00000020342
142662212 - 142714392
52181
ENSAPLT00000015548
142683482 - 142714392
30911