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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142790336_142791231_R

Intron Information:

Intron Rank:
131099
Intron Class:
major
Intron Phase:
Intron Coordinates:
142790336 - 142791231
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTTA
5'SS Class:
major
3'SS Sequence:
GTTGGTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAAACCCCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.4
33.8
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
64.8
0.33
1
54.8
45.8
Minor 5ss
42.7
-0.8
2.9
49.3
47
Minor BPS
42.7
-0.4
2
60.28
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017752
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043599
142790286 - 142791951
1666
ENSAPLT00000041531
142790286 - 142796437
6152