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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142795627_142795757_R

Intron Information:

Intron Rank:
131101
Intron Class:
major
Intron Phase:
Intron Coordinates:
142795627 - 142795757
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
TCTTTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTGTTTAGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
60.4
44.5
Major BPS
79.2
0.72
1
75
40
Major PPT
89.4
0.89
0.6
84.3
23.9
Minor 5ss
45.3
-0.5
3.1
69.9
40.4
Minor BPS
50.4
0.09
1.7
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017752
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041531
142790286 - 142796437
6152