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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142802083_142803300_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142802083 - 142803300
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGCGG
5'SS Class:
major
3'SS Sequence:
TATTTCCTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATTTCCTTTAAG
Flanking Amino Acid:
EIFQLLRNMQLPNGVTYHTG
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
55.2
49
Major BPS
77.3
0.68
1
81.5
27
Major PPT
76.6
0.6
1
80.3
31.7
Minor 5ss
25.6
-2.8
3
30.5
42.7
Minor BPS
64
0.3
1.8
71.34
41

Associated Gene:

Gene:
MED30
Ensembl Gene ID:
ENSAPLG00000014888
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015516
142801903 - 142817500
15598